Readabhgenotypes

Author: dvda

August undefined, 2024

WebThe ABHgenotypeR package contains the following man pages: ABHgenotypeR correctStretches correctUndercalledHets imputeByFlanks plotAlleleFreq plotCompareGenos plotGenos plotMarkerDensity readABHgenotypes reportGenos writeABHgenotypes WebThe ABHgenotypeR R package to easily visualize and manipulate ABH genotypes - ABHgenotypeR/readABHgenotypes.Rd at master · StefanReuscher/ABHgenotypeR

ABHgenotypeR source listing

WebFeb 4, 2016 · The ABHgenotypeR package is supposed to serve as an intermediate but independent analysis tool between the TASSEL GBS pipeline and the qtl package. … Web#' Export a genotype list to a .csv file. #' #' @param genos The output of readABHgenotypes or one of the impuation/error #' correction functions. #' @param outfile The path and filename of the output file. #' #' @return A file which can be used in R/qtl or elsewhere. #' #' @examples \dontrun {writeABHgenotypes (genotypes, outfile = … port townsend wa used cars

plotCompareGenos : Compare to genotype matrices

WebBlood Type Genetics. Early experiments with human blood transfusion often resulted in the death of the patient for unknown reasons. In 1901, it was discovered that there were … WebABHgenotypeR：一个易于可视化和操作ABH基因型的软件包。. 根据侧翼等位基因纠正短的错误拉伸。. 根据侧翼等位基因纠正所谓的杂合位点。. 沿着染色体绘制亲本等位基因频率 … ironhouse shepherds

plotAlleleFreq: Plot the parental allele frequencies along the ...

ABHgenotypeR: Easy Visualization of ABH Genotypes

WebMay 9, 2024 · Output of readABHgenotypes. genos_2: Output of readABHgenotypes. Note that both genos object need to have identical numbers of marker x individuals. markerToPlot: A character vector of marker names which appear in the plot. Defaults to all. individualsToPlot: A character vector of individual names which appear in the plot. … WebDocumented in correctStretches. #' Correct short miscalled stretches based on flanking alleles. #' #' @param inputGenos A genotypes list object. #' @param maxHapLength The maximum length of stretches flanked #' by non-heterzygous sites that are changed. If set to 1 #' (default) only AXA or BXB will be corrected. If set to 2, both AXA and AXYA ... ironhorse trailers used for saleWebRun the code above in your browser using DataCamp Workspace. Powered by DataCamp DataCamp ironhorse resources

"WebPhenotypes and Genotypes. A phenotype consists of only those traits or antigens that can be directly typed, whereas a genotype is the sum of all genes a person has inherited within … " - Readabhgenotypes

Readabhgenotypes

ABHgenotypeR source: R/correctStretches.R - rdrr.io

WebThe Rh system is actually far more complex than the ABO system in that there are 35 different possibilities that one could inherit from each parent. These, however, are roughly … WebMay 2, 2024 · plotGenos: Plot graphical genotypes. plotMarkerDensity: Plot the marker density along the chromosomes. readABHgenotypes: Read in the output of the genosToABH plugin. reportGenos: Report the total and relative number of each allele in a... writeABHgenotypes: Export a genotype list to a .csv file. Browse all... Home / CRAN / …

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WebIn ABHgenotypeR: Easy Visualization of ABH Genotypes Defines functions plotMarkerDensity Documented in plotMarkerDensity #' Plot the marker density along the chromosomes. #' #' @param genos The output of readABHgenotypes #' #' @return A plot of marker densities along the chromosomes. readABHgenotypes: Read in the output of the genosToABH plugin. In ABHgenotypeR: Easy Visualization of ABH Genotypes Description Usage Arguments Details Value Examples View source: R/readABHgenotypes.R Description Read in the output of the genosToABH plugin. Usage Arguments Details

WebreadABHgenotypes Read in the output of the genosToABH plugin. Description Read in the output of the genosToABH plugin. Usage readABHgenotypes(pathToABH, nameA = "A", … WebIn ABHgenotypeR: Easy Visualization of ABH Genotypes Defines functions plotGenos Documented in plotGenos #' Plot graphical genotypes. #' #' @param genos The output of readABHgenotypes #' @param markerToPlot A character vector of marker names which appear in the #' plot.

WebPlot the parental allele frequencies along the chromosomes. WebreadABHgenotypes: Read in the output of the genosToABH plugin. reportGenos: Report the total and relative number of each allele in a... writeABHgenotypes: Export a genotype list to a .csv file. Browse all...

WebBlood Type Genetics. Early experiments with human blood transfusion often resulted in the death of the patient for unknown reasons. In 1901, it was discovered that there were …

WebThe ABHgenotypeR R package to easily visualize and manipulate ABH genotypes. Introduction The ABHgenotypeR package provides simple imputation, error-correction and … ironhouse sanitation districtWebRead in the output of the genosToABH plugin. ironhorse fundinghttp://www.idata8.com/rpackage/ABHgenotypeR/00Index.html port townsend wash ten day forecastWeb:exclamation: This is a read-only mirror of the CRAN R package repository. ABHgenotypeR — Easy Visualization of ABH Genotypes. Homepage: http://github.com ... ironhorse flip top motorcycle trailerWebOutput of readABHgenotypes. genos_2: Output of readABHgenotypes. Note that both genos object need to have identical numbers of marker x individuals. markerToPlot: A character vector of marker names which appear in the plot. Defaults to all. individualsToPlot: A character vector of individual names which appear in the plot. Defaults to all ... port townsend wa wooden boat festivalWebreadABHgenotypes (pathToABH, nameA = "A", nameB = "B", readPos = TRUE) Arguments Details The input files should be a .csv file holding genotypes as specified by the qtl … port townsend washington b\u0026oWebThe output of readABHgenotypes. markerToPlot: A character vector of marker names which appear in the plot. Defaults to all. individualsToPlot: A character vector of individual … ironhouseroofing gmail.com